Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03166AraC family transcriptional regulator, arabinose operon regulatory protein. (292 aa)    
Predicted Functional Partners:
C810_01144
Hypothetical protein.
 
0.929
C810_04182
Hypothetical protein.
 
0.928
C810_03163
Hypothetical protein.
 
 
 0.902
C810_03164
Sugar (Glycoside-Pentoside-Hexuronide) transporter.
 
     0.824
C810_04506
Hypothetical protein.
 
 
 0.799
C810_05140
Hypothetical protein.
 
 
 0.755
C810_00821
Hypothetical protein.
   
 
 0.740
C810_03239
Hypothetical protein.
 
 
 0.740
C810_03165
Hypothetical protein.
 
  
  0.736
C810_01576
Hypothetical protein.
 
 
 0.733
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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