Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03217Hypothetical protein. (70 aa)    
Predicted Functional Partners:
C810_03833
Hypothetical protein.
 
 
 0.887
C810_03867
Hypothetical protein.
 
 
 0.874
C810_03342
UDP-N-acetylglucosamine 4,6-dehydratase.
  
 
 0.759
C810_03799
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.675
C810_03898
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.625
C810_03819
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.619
C810_03880
Hypothetical protein.
  
 
 0.613
C810_03868
HAD hydrolase, family IA.
 
     0.595
C810_00841
Hypothetical protein.
  
 0.552
C810_01660
Hypothetical protein.
  
 0.552
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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