Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03232Hypothetical protein. (669 aa)    
Predicted Functional Partners:
C810_03233
Hypothetical protein.
 
    
0.869
C810_04037
Hypothetical protein.
  
     0.771
C810_03024
Hemerythrin-like metal-binding domain-containing protein.
  
     0.768
C810_01022
Hypothetical protein.
  
     0.761
C810_01662
Hypothetical protein.
  
     0.756
C810_02421
Hypothetical protein.
  
     0.746
C810_00134
Hypothetical protein.
  
     0.739
C810_01023
4-oxalocrotonate tautomerase family enzyme.
  
     0.737
C810_03995
Hypothetical protein.
  
     0.724
C810_03124
Hypothetical protein.
  
     0.723
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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