Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03347Pseudaminic acid biosynthesis-associated protein PseG. (335 aa)    
Predicted Functional Partners:
C810_03344
Pseudaminic acid synthase.
 
 
 0.993
C810_05093
Hypothetical protein.
 
 
 0.944
C810_00223
Hypothetical protein.
 
 
 0.905
C810_03349
Hypothetical protein.
 
     0.895
C810_03342
UDP-N-acetylglucosamine 4,6-dehydratase.
 
   
 0.888
C810_03351
UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.804
C810_03341
Hypothetical protein.
 
   
 0.797
C810_03343
Hypothetical protein.
  
 
 0.797
C810_03346
Hypothetical protein.
       0.788
C810_03345
Hypothetical protein.
       0.781
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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