Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03375Hypothetical protein. (64 aa)    
Predicted Functional Partners:
C810_03376
Hypothetical protein; Belongs to the 'phage' integrase family.
 
     0.880
C810_00877
Hypothetical protein.
  
     0.772
C810_00825
Hypothetical protein.
 
     0.748
C810_00881
Hypothetical protein.
 
     0.746
C810_00807
Hypothetical protein.
  
     0.719
C810_00829
Hypothetical protein.
 
     0.706
C810_00884
Hypothetical protein.
 
     0.701
C810_00828
Hypothetical protein; Belongs to the 'phage' integrase family.
 
     0.691
C810_00883
Hypothetical protein; Belongs to the 'phage' integrase family.
 
     0.691
C810_00844
Hypothetical protein; Belongs to the 'phage' integrase family.
 
     0.668
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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