Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03390Hypothetical protein. (300 aa)    
Predicted Functional Partners:
C810_03393
Hypothetical protein.
 
  0.958
C810_03392
Hypothetical protein.
 
     0.945
C810_04930
Hypothetical protein.
 
0.927
C810_05119
Hypothetical protein.
 
0.907
C810_04283
Hypothetical protein.
 
 
0.827
C810_04588
Hypothetical protein.
  
  0.789
C810_03388
Hypothetical protein.
 
     0.784
C810_03391
Hypothetical protein.
       0.781
C810_00135
Hypothetical protein.
 
 
 0.771
C810_03223
Hypothetical protein.
  
  0.696
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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