Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03412Hypothetical protein. (288 aa)    
Predicted Functional Partners:
C810_03413
Hypothetical protein.
 
     0.914
C810_03408
Hypothetical protein.
 
   
 0.873
C810_03407
Hypothetical protein.
 
   
 0.872
C810_03409
Hypothetical protein.
 
     0.866
C810_03414
Type IV secretion system protein VirD4.
 
     0.861
C810_03404
Hypothetical protein.
 
     0.823
C810_00590
Hypothetical protein.
 
    0.771
C810_00569
Hypothetical protein.
 
   
 0.770
C810_04026
Hypothetical protein.
 
     0.767
C810_03417
Hypothetical protein.
 
     0.766
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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