Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03417Hypothetical protein. (156 aa)    
Predicted Functional Partners:
C810_03416
Type IV secretion system protein VirD4.
 
     0.910
C810_03419
Hypothetical protein.
 
     0.889
C810_03421
Hypothetical protein.
 
     0.889
C810_03422
ParB-like partition protein; Belongs to the ParB family.
 
     0.828
C810_03420
DNA (cytosine-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.794
C810_03404
Hypothetical protein.
 
     0.780
C810_03418
Hypothetical protein.
 
     0.775
C810_04032
Hypothetical protein.
 
     0.770
C810_03400
Hypothetical protein.
  
     0.767
C810_03401
Hypothetical protein.
 
     0.766
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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