Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03431Hypothetical protein. (305 aa)    
Predicted Functional Partners:
C810_03430
Hypothetical protein.
     0.994
rsmI
16S rRNA (-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.653
C810_03271
Hypothetical protein.
  
  
 0.652
C810_03429
Hypothetical protein.
       0.529
C810_02529
Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
    
  0.511
C810_00565
Hypothetical protein.
 
     0.436
C810_04948
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
    0.405
C810_02140
Hypothetical protein.
  
     0.402
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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