Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03435Antibiotic transport system ATP-binding protein. (304 aa)    
Predicted Functional Partners:
C810_03436
Hypothetical protein.
 
  0.962
C810_03437
Hypothetical protein.
 
     0.921
C810_02614
Hypothetical protein.
 
  0.838
C810_03434
Hypothetical protein.
 
     0.765
C810_02615
Hypothetical protein.
 
     0.733
C810_01764
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein.
     
  0.665
C810_04107
Hypothetical protein.
  
 
  0.599
C810_00545
Hypothetical protein.
 
  
  0.590
C810_00544
Hypothetical protein.
    
  0.580
C810_02561
Nickel ABC transporter, nickel/metallophore periplasmic binding protein.
 
  
  0.577
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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