STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C810_03439Citrate synthase; Belongs to the citrate synthase family. (445 aa)    
Predicted Functional Partners:
C810_00260
Aconitate hydratase 1.
 
 0.998
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 0.993
C810_04948
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 0.984
C810_03091
Isocitrate dehydrogenase, NADP-dependent; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 
 0.971
C810_04911
Hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type.
  
 
 0.959
C810_05002
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.958
C810_00336
Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.953
C810_04912
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type.
  
 
 0.952
C810_00053
Hypothetical protein.
  
 0.948
C810_03050
NADH-quinone oxidoreductase subunit F.
  
 
 0.947
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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