Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_03488Hypothetical protein. (140 aa)    
Predicted Functional Partners:
C810_00690
Hypothetical protein.
   
    0.765
C810_02896
Heavy metal translocating P-type ATPase.
 
  
 0.719
C810_03489
Hypothetical protein.
       0.628
C810_02362
Flagellar motor switch protein FliN.
    
   0.611
C810_04168
Hypothetical protein.
 
    0.453
C810_04166
Hypothetical protein.
 
    0.444
C810_00080
Sigma-70 family RNA polymerase sigma factor.
    
   0.401
C810_01372
Hypothetical protein.
    
   0.401
C810_02379
FliA/WhiG family RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
    
   0.401
C810_02589
Sigma-70 family RNA polymerase sigma factor.
    
   0.401
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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