Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04024Hypothetical protein. (626 aa)    
Predicted Functional Partners:
C810_04008
Hypothetical protein.
  
     0.678
C810_04003
Hypothetical protein.
  
     0.597
C810_04025
Type IV secretion system protein VirD4.
 
    0.570
C810_04009
Hypothetical protein.
  
     0.560
C810_00611
Hypothetical protein.
  
     0.520
C810_01035
Hypothetical protein.
  
     0.520
C810_01110
Hypothetical protein.
  
     0.519
C810_04013
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.516
C810_04023
Hypothetical protein.
       0.508
C810_03697
Hypothetical protein.
  
     0.467
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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