Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04052Hypothetical protein. (264 aa)    
Predicted Functional Partners:
C810_04051
YbgI/family dinuclear metal center protein.
  
  
 0.945
C810_02497
Hypothetical protein; Belongs to the UPF0297 family.
  
     0.769
sigA
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.715
C810_04701
Hypothetical protein.
  
     0.702
addA
Helicase-exonuclease AddAB, AddA subunit; ATP-dependent DNA helicase.
 
     0.693
C810_04965
Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.681
C810_02495
Hypothetical protein.
 
     0.664
C810_03077
Hypothetical protein; ATP-dependent DNA helicase.
 
     0.631
C810_04303
Hypothetical protein.
   
    0.625
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.613
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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