Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04080Hypothetical protein. (295 aa)    
Predicted Functional Partners:
C810_04079
Hypothetical protein.
 
  0.937
C810_04078
Hypothetical protein.
       0.762
C810_04406
Hypothetical protein.
 
  0.718
C810_04077
Hypothetical protein.
       0.672
C810_01764
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein.
     
  0.665
C810_05127
Hypothetical protein.
  
  
  0.614
C810_02022
Hypothetical protein.
  
 
 0.601
C810_04081
Hypothetical protein.
 
     0.590
ecfA
Cobalt/nickel transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.586
C810_04226
Hypothetical protein.
 
  0.577
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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