Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04293Cof-like hydrolase. (278 aa)    
Predicted Functional Partners:
C810_04294
PTS system, sucrose-specific IIBC component.
 
  
 0.914
C810_04295
Hypothetical protein.
    
 0.820
C810_01008
Cof-like hydrolase.
  
 
  0.810
C810_03944
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.735
C810_05270
PTS system, glucose subfamily, IIA component.
 
  
 0.658
C810_00769
PTS system, glucose subfamily, IIA component.
 
  
 0.649
C810_01180
PTS system, sucrose-specific IIBC component.
 
  
 0.649
C810_03154
PTS system, glucose subfamily, IIA component.
 
  
 0.645
C810_00766
PTS system, beta-glucoside-specific IIABC component.
 
  
 0.642
C810_02290
PTS system, beta-glucoside-specific IIABC component.
 
  
 0.634
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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