Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04415Hypothetical protein. (280 aa)    
Predicted Functional Partners:
C810_04414
Hypothetical protein.
 
 0.983
C810_01790
Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.981
C810_04413
Hypothetical protein.
 
  0.962
C810_00357
Hypothetical protein.
 
 0.930
C810_02316
Hypothetical protein.
 
 0.930
C810_04904
Hypothetical protein.
 
 0.927
C810_03922
Hypothetical protein.
 
 0.925
C810_00984
Hypothetical protein.
 
 0.921
C810_02299
Multiple sugar transport system permease.
 
 0.920
C810_04416
Hypothetical protein.
 
     0.919
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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