Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04416Hypothetical protein. (483 aa)    
Predicted Functional Partners:
C810_02315
ABC-type bacteriocin transporter.
  
 0.940
C810_04413
Hypothetical protein.
 
     0.928
C810_04415
Hypothetical protein.
 
     0.919
C810_04414
Hypothetical protein.
 
     0.896
C810_02318
Hypothetical protein.
 
  
0.861
C810_00359
Hypothetical protein.
 
  
0.855
C810_04168
Hypothetical protein.
 
  
 0.848
C810_04483
Hypothetical protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
    
 0.823
C810_00356
Hypothetical protein.
 
     0.788
C810_02314
Hypothetical protein.
 
     0.788
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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