Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04423PTS system, trehalose-specific IIBC component. (645 aa)    
Predicted Functional Partners:
C810_04422
Alpha,alpha-phosphotrehalase.
 
 
 0.824
C810_01979
PTS system, glucose-like IIB component.
 
 
 0.788
C810_04424
Trehalose operon repressor.
 
   
 0.761
C810_01179
Hypothetical protein; Belongs to the glycosyl hydrolase 32 family.
 
 
 0.757
C810_05270
PTS system, glucose subfamily, IIA component.
 
0.736
C810_00766
PTS system, beta-glucoside-specific IIABC component.
 
0.731
C810_00769
PTS system, glucose subfamily, IIA component.
 
0.730
C810_02290
PTS system, beta-glucoside-specific IIABC component.
 
0.729
C810_03154
PTS system, glucose subfamily, IIA component.
 
0.716
C810_01180
PTS system, sucrose-specific IIBC component.
 
0.708
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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