C810_04443 protein (Lachnospiraceae bacterium A2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C810_04443

Hypothetical protein. (557 aa)

Predicted Functional Partners:

C810_04442

0.975

C810_04930

0.964

C810_05119

0.939

C810_04441

0.908

C810_05275

0.896

C810_05274

0.886

C810_04439

0.876

C810_04283

0.867

pstB

0.857

C810_04444

0.795

Your Current Organism:

Lachnospiraceae bacterium A2

NCBI taxonomy Id: 397290
Other names: L. bacterium A2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C810_04283	C810_04442	C810_04283	C810_04442	Hypothetical protein.	Hypothetical protein.	0.899
C810_04283	C810_04443	C810_04283	C810_04443	Hypothetical protein.	Hypothetical protein.	0.867
C810_04283	C810_04444	C810_04283	C810_04444	Hypothetical protein.	Hypothetical protein.	0.992
C810_04283	C810_04930	C810_04283	C810_04930	Hypothetical protein.	Hypothetical protein.	0.997
C810_04283	C810_05119	C810_04283	C810_05119	Hypothetical protein.	Hypothetical protein.	0.998
C810_04283	C810_05274	C810_04283	C810_05274	Hypothetical protein.	Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.	0.902
C810_04283	C810_05275	C810_04283	C810_05275	Hypothetical protein.	Hypothetical protein.	0.839
C810_04439	C810_04441	C810_04439	C810_04441	Phosphate ABC transporter, permease PstA.	Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.	0.997
C810_04439	C810_04442	C810_04439	C810_04442	Phosphate ABC transporter, permease PstA.	Hypothetical protein.	0.833
C810_04439	C810_04443	C810_04439	C810_04443	Phosphate ABC transporter, permease PstA.	Hypothetical protein.	0.876
C810_04439	C810_04444	C810_04439	C810_04444	Phosphate ABC transporter, permease PstA.	Hypothetical protein.	0.532
C810_04439	pstB	C810_04439	C810_04440	Phosphate ABC transporter, permease PstA.	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.999
C810_04441	C810_04439	C810_04441	C810_04439	Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.	Phosphate ABC transporter, permease PstA.	0.997
C810_04441	C810_04442	C810_04441	C810_04442	Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.	Hypothetical protein.	0.852
C810_04441	C810_04443	C810_04441	C810_04443	Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.	Hypothetical protein.	0.908
C810_04441	C810_04444	C810_04441	C810_04444	Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.	Hypothetical protein.	0.536
C810_04441	C810_04930	C810_04441	C810_04930	Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.	Hypothetical protein.	0.452
C810_04441	C810_05274	C810_04441	C810_05274	Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.	Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.	0.411
C810_04441	C810_05275	C810_04441	C810_05275	Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.	Hypothetical protein.	0.418
C810_04441	pstB	C810_04441	C810_04440	Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.	Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.997