Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04565ABC transporter ATP-binding protein. (286 aa)    
Predicted Functional Partners:
C810_04564
GntR family transcriptional regulator.
 
    0.950
C810_04566
Hypothetical protein.
 
     0.946
C810_04567
Hypothetical protein.
       0.758
C810_04568
Hypothetical protein.
       0.686
C810_04569
Hypothetical protein.
       0.686
C810_01764
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein.
     
  0.665
C810_02022
Hypothetical protein.
 
 
 0.648
C810_00277
Hypothetical protein.
 
    0.641
C810_04570
Hypothetical protein.
 
  
 
0.610
C810_01790
Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
  0.606
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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