Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04710Hypothetical protein. (413 aa)    
Predicted Functional Partners:
C810_04712
Hypothetical protein.
 
     0.908
C810_04711
Hypothetical protein.
 
     0.895
C810_01041
Hypothetical protein.
  
     0.741
C810_02428
Hypothetical protein.
  
     0.697
C810_04227
Hypothetical protein.
  
     0.683
C810_04226
Hypothetical protein.
  
     0.682
C810_04713
Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.660
C810_03234
Hypothetical protein.
  
     0.625
C810_01040
Hypothetical protein.
  
     0.555
C810_02786
Sigma-70 family RNA polymerase sigma factor.
  
     0.474
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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