Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04783Excisionase family DNA binding domain-containing protein; Overlaps another CDS with the same product name. (70 aa)    
Predicted Functional Partners:
C810_04784
Excisionase family DNA binding domain-containing protein; Overlaps another CDS with the same product name.
 
     0.952
C810_04782
Hypothetical protein; Belongs to the 'phage' integrase family.
 
     0.939
C810_04948
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
 0.910
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
     
  0.787
C810_04785
Hypothetical protein.
       0.780
C810_01637
Hypothetical protein.
  
     0.503
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
     
 0.503
C810_00260
Aconitate hydratase 1.
     
 0.500
C810_01027
Hypothetical protein.
  
     0.488
C810_04528
Hypothetical protein.
  
     0.486
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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