Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04785Hypothetical protein. (81 aa)    
Predicted Functional Partners:
C810_04783
Excisionase family DNA binding domain-containing protein; Overlaps another CDS with the same product name.
       0.780
C810_04784
Excisionase family DNA binding domain-containing protein; Overlaps another CDS with the same product name.
       0.779
C810_04782
Hypothetical protein; Belongs to the 'phage' integrase family.
       0.746
C810_02721
Hypothetical protein.
     
  0.607
C810_03928
Hypothetical protein.
     
  0.607
C810_02952
AbrB family transcriptional regulator.
    
 0.602
C810_04684
Hypothetical protein.
    
 0.593
C810_02001
RelE/StbE family addiction module toxin.
    
 0.590
C810_00679
Prevent-host-death family protein.
    
 0.575
C810_01965
txe/YoeB family addiction module toxin.
     
 0.545
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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