Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_048776-phospho-beta-glucosidase; Overlaps another CDS with the same product name. (221 aa)    
Predicted Functional Partners:
C810_04878
6-phospho-beta-glucosidase; Overlaps another CDS with the same product name.
     0.994
C810_02290
PTS system, beta-glucoside-specific IIABC component.
 
 
 0.913
C810_04876
Hypothetical protein.
 
 
 0.912
C810_01180
PTS system, sucrose-specific IIBC component.
 
 
 0.909
C810_03154
PTS system, glucose subfamily, IIA component.
 
 
 0.909
C810_05270
PTS system, glucose subfamily, IIA component.
 
 
 0.908
C810_00766
PTS system, beta-glucoside-specific IIABC component.
 
 
 0.907
C810_00769
PTS system, glucose subfamily, IIA component.
  
 
 0.895
C810_04294
PTS system, sucrose-specific IIBC component.
  
 
 0.895
C810_04945
Hypothetical protein.
 
 
 0.854
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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