Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C810_04992Hypothetical protein. (207 aa)    
Predicted Functional Partners:
C810_04930
Hypothetical protein.
  
 0.915
C810_05119
Hypothetical protein.
  
 0.893
C810_04283
Hypothetical protein.
   
 0.790
C810_00702
Ribose-phosphate diphosphokinase.
   
  0.680
C810_00581
Hypothetical protein.
 
  0.635
C810_00135
Hypothetical protein.
 
 
 0.623
C810_04620
Hypothetical protein.
  
  0.619
C810_00499
Hypothetical protein.
 
  0.616
C810_04980
Two-component system, chemotaxis family, response regulator CheV.
   
 0.611
C810_05120
Hypothetical protein.
 
 
 0.605
Your Current Organism:
Lachnospiraceae bacterium A2
NCBI taxonomy Id: 397290
Other names: L. bacterium A2
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