Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C804_00159 | acpP | C804_00159 | C804_00156 | Hypothetical protein. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.622 |
C804_00159 | plsX | C804_00159 | C804_00157 | Hypothetical protein. | Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA. | 0.848 |
C804_00159 | rnc | C804_00159 | C804_00155 | Hypothetical protein. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.807 |
C804_00159 | smc | C804_00159 | C804_00154 | Hypothetical protein. | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.725 |
C804_02221 | C804_03427 | C804_02221 | C804_03427 | Hypothetical protein. | PAS domain S-box protein. | 0.999 |
C804_02221 | C804_04056 | C804_02221 | C804_04056 | Hypothetical protein. | RecQ family ATP-dependent DNA helicase. | 0.978 |
C804_02221 | acpP | C804_02221 | C804_00156 | Hypothetical protein. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.643 |
C804_02221 | guaA | C804_02221 | C804_03244 | Hypothetical protein. | GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP. | 0.921 |
C804_02221 | rnc | C804_02221 | C804_00155 | Hypothetical protein. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.435 |
C804_02221 | scpA | C804_02221 | C804_00739 | Hypothetical protein. | Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.566 |
C804_02221 | scpB | C804_02221 | C804_00738 | Hypothetical protein. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.535 |
C804_02221 | smc | C804_02221 | C804_00154 | Hypothetical protein. | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.867 |
C804_03427 | C804_02221 | C804_03427 | C804_02221 | PAS domain S-box protein. | Hypothetical protein. | 0.999 |
C804_03427 | guaA | C804_03427 | C804_03244 | PAS domain S-box protein. | GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP. | 0.517 |
C804_03427 | smc | C804_03427 | C804_00154 | PAS domain S-box protein. | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.776 |
C804_04056 | C804_02221 | C804_04056 | C804_02221 | RecQ family ATP-dependent DNA helicase. | Hypothetical protein. | 0.978 |
C804_04056 | guaA | C804_04056 | C804_03244 | RecQ family ATP-dependent DNA helicase. | GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP. | 0.496 |
C804_04056 | smc | C804_04056 | C804_00154 | RecQ family ATP-dependent DNA helicase. | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.743 |
acpP | C804_00159 | C804_00156 | C804_00159 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Hypothetical protein. | 0.622 |
acpP | C804_02221 | C804_00156 | C804_02221 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Hypothetical protein. | 0.643 |
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