Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_00403Hypothetical protein. (285 aa)    
Predicted Functional Partners:
C804_00402
Hypothetical protein.
  
 
 0.879
C804_02931
Hypothetical protein.
  
 
 0.866
C804_04343
Hypothetical protein.
  
 
 0.866
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
    
 0.830
C804_00401
N-acetylglucosamine-6-phosphate deacetylase.
 
   
 0.819
C804_04299
Hypothetical protein.
    
  0.813
C804_00833
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
 
  
 0.740
C804_03037
Cobalt/nickel transport system permease.
 
    0.637
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
 
  
 0.627
C804_06077
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.602
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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