Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_00522Hypothetical protein. (136 aa)    
Predicted Functional Partners:
C804_00328
Hypothetical protein; Belongs to the GHMP kinase family.
 
 0.795
C804_00514
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
 
 0.771
C804_00523
Hypothetical protein.
       0.737
C804_00519
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.727
C804_00520
Hypothetical protein.
 
    0.726
C804_03991
Hypothetical protein; Belongs to the inositol monophosphatase superfamily.
    
 0.726
C804_03097
Nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
 
 0.720
lysS
lysine-tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.670
C804_00524
Hypothetical protein.
       0.661
C804_04481
Hypothetical protein.
 
 
 0.602
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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