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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_00565Hypothetical protein. (100 aa)    
Predicted Functional Partners:
C804_00563
Heavy metal translocating P-type ATPase.
 
  
 0.925
C804_04736
Heavy metal translocating P-type ATPase.
 
  
 0.879
C804_00564
Hypothetical protein.
  
  
 0.817
C804_04671
Heavy metal translocating P-type ATPase.
 
  
 0.720
C804_04735
Hypothetical protein.
 
  
 0.639
C804_00379
Heavy metal translocating P-type ATPase.
 
  
 0.622
C804_00566
Thioredoxin-disulfide reductase.
     
 0.601
C804_00567
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
     
 0.530
birA
biotin-[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.525
C804_00093
Hypothetical protein.
  
 
  0.467
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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