C804_00566 protein (Lachnospiraceae bacterium A4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C804_00566

Thioredoxin-disulfide reductase. (547 aa)

Predicted Functional Partners:

C804_00567

0.999

C804_03324

0.984

C804_05572

0.980

C804_05169

0.945

C804_06439

0.944

C804_06440

0.937

C804_06441

0.937

C804_03699

0.931

pyrD

0.924

C804_03543

0.876

Your Current Organism:

Lachnospiraceae bacterium A4

NCBI taxonomy Id: 397291
Other names: L. bacterium A4

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C804_00566	C804_00567	C804_00566	C804_00567	Thioredoxin-disulfide reductase.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	0.999
C804_00566	C804_03324	C804_00566	C804_03324	Thioredoxin-disulfide reductase.	Thioredoxin; Belongs to the thioredoxin family.	0.984
C804_00566	C804_03543	C804_00566	C804_03543	Thioredoxin-disulfide reductase.	Hypothetical protein.	0.876
C804_00566	C804_03699	C804_00566	C804_03699	Thioredoxin-disulfide reductase.	Hypothetical protein.	0.931
C804_00566	C804_05169	C804_00566	C804_05169	Thioredoxin-disulfide reductase.	Cysteine desulfurase.	0.945
C804_00566	C804_05572	C804_00566	C804_05572	Thioredoxin-disulfide reductase.	Hypothetical protein.	0.980
C804_00566	C804_06439	C804_00566	C804_06439	Thioredoxin-disulfide reductase.	Hypothetical protein.	0.944
C804_00566	C804_06440	C804_00566	C804_06440	Thioredoxin-disulfide reductase.	Hypothetical protein.	0.937
C804_00566	C804_06441	C804_00566	C804_06441	Thioredoxin-disulfide reductase.	Hypothetical protein.	0.937
C804_00566	pyrD	C804_00566	C804_01746	Thioredoxin-disulfide reductase.	Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate.	0.924
C804_00567	C804_00566	C804_00567	C804_00566	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	Thioredoxin-disulfide reductase.	0.999
C804_00567	C804_03324	C804_00567	C804_03324	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	Thioredoxin; Belongs to the thioredoxin family.	0.772
C804_00567	C804_03699	C804_00567	C804_03699	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	Hypothetical protein.	0.970
C804_00567	C804_05572	C804_00567	C804_05572	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	Hypothetical protein.	0.720
C804_00567	C804_06439	C804_00567	C804_06439	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	Hypothetical protein.	0.683
C804_00567	C804_06440	C804_00567	C804_06440	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	Hypothetical protein.	0.683
C804_00567	C804_06441	C804_00567	C804_06441	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	Hypothetical protein.	0.683
C804_03324	C804_00566	C804_03324	C804_00566	Thioredoxin; Belongs to the thioredoxin family.	Thioredoxin-disulfide reductase.	0.984
C804_03324	C804_00567	C804_03324	C804_00567	Thioredoxin; Belongs to the thioredoxin family.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.	0.772
C804_03324	C804_03543	C804_03324	C804_03543	Thioredoxin; Belongs to the thioredoxin family.	Hypothetical protein.	0.614