Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_00583Hypothetical protein. (372 aa)    
Predicted Functional Partners:
C804_00582
Hypothetical protein.
       0.671
C804_00585
RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family.
 
     0.666
C804_00584
Hypothetical protein.
       0.661
C804_03142
Flagellar operon protein.
  
     0.598
C804_00586
RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.555
mrnC
Hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
       0.522
cysS
cysteine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.522
C804_01455
Hypothetical protein.
  
     0.521
C804_00441
Hypothetical protein.
  
     0.490
C804_02161
Hypothetical protein.
  
     0.472
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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