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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_00950Hypothetical protein. (326 aa)    
Predicted Functional Partners:
C804_01323
Hypothetical protein.
  
 0.943
C804_04092
uroporphyrinogen-III C-methyltransferase.
  
  
 0.903
rnfB
Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
 0.756
C804_02100
Glutamate synthase (NADPH), homotetrameric.
  
 
  0.520
C804_04867
Glutamate synthase, NADH/NADPH, small subunit.
  
 
  0.520
C804_05590
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.519
C804_01343
Hypothetical protein.
   
 
 0.517
C804_03746
Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
  
 0.511
C804_03699
Hypothetical protein.
   
 0.491
C804_00949
Hypothetical protein; Belongs to the N(4)/N(6)-methyltransferase family.
  
    0.473
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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