Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_01014Hypothetical protein. (261 aa)    
Predicted Functional Partners:
C804_03082
Hypothetical protein.
 
     0.702
C804_03715
Hypothetical protein.
 
     0.698
C804_02061
Hypothetical protein.
 
     0.687
C804_01012
Hypothetical protein.
       0.671
C804_01013
Hypothetical protein.
       0.671
C804_01011
Hypothetical protein.
       0.657
C804_00935
Hypothetical protein.
 
     0.592
kptA
Hypothetical protein; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
   
 0.590
C804_02041
Hypothetical protein.
 
     0.586
C804_01707
Hypothetical protein.
 
     0.581
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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