Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_01285Hypothetical protein. (271 aa)    
Predicted Functional Partners:
C804_02818
Hypothetical protein.
     0.833
C804_00134
Hypothetical protein.
     0.820
C804_02820
Hypothetical protein.
 
     0.788
C804_02819
Hypothetical protein.
 
     0.786
C804_00131
Hypothetical protein.
  
     0.766
C804_00132
Hypothetical protein.
 
     0.760
C804_02061
Hypothetical protein.
  
     0.672
C804_03082
Hypothetical protein.
  
     0.671
C804_03715
Hypothetical protein.
  
     0.648
C804_02202
Hypothetical protein.
 
     0.628
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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