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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_01434Hypothetical protein. (318 aa)    
Predicted Functional Partners:
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
    
  0.937
rplB
50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 
  0.935
C804_01858
Hypothetical protein.
  
     0.704
C804_03142
Flagellar operon protein.
    
 0.702
C804_03897
Hypothetical protein.
  
     0.701
C804_01432
Hypothetical protein.
 
     0.591
C804_02083
Hypothetical protein.
  
   
 0.578
C804_04182
Hypothetical protein.
  
     0.570
C804_01255
Hypothetical protein.
  
     0.546
C804_01304
Hypothetical protein.
 
     0.528
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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