Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_01469YbaK/EbsC protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (156 aa)    
Predicted Functional Partners:
C804_00429
Flagellar motor switch protein FliN.
    
   0.779
C804_02895
Hypothetical protein.
    
   0.779
C804_06059
Hypothetical protein.
    
   0.779
C804_01468
Hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type.
       0.684
C804_00440
Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.560
fliE
Flagellar hook-basal body complex protein FliE.
    
   0.560
C804_02079
Hypothetical protein.
    
   0.544
C804_03431
Hypothetical protein.
    
   0.544
C804_01470
Hypothetical protein.
       0.520
C804_00415
Hypothetical protein.
    
   0.517
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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