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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_01546Hypothetical protein. (144 aa)    
Predicted Functional Partners:
C804_00797
Methionine synthase.
    
  0.792
C804_01547
Hypothetical protein; Belongs to the peptidase C1 family.
       0.738
metG-2
methionine-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.699
C804_02259
Hypothetical protein.
 
  
 0.574
C804_01550
Hypothetical protein.
 
  
 0.561
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
 
  0.497
C804_00798
Hypothetical protein.
 
  
  0.493
C804_00714
Hypothetical protein.
    
  0.476
C804_05954
Hypothetical protein.
 
  
 0.472
C804_00479
Hypothetical protein.
  
 
 0.470
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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