STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_01547Hypothetical protein; Belongs to the peptidase C1 family. (439 aa)    
Predicted Functional Partners:
C804_01546
Hypothetical protein.
       0.738
C804_02059
Hypothetical protein.
    
   0.685
C804_02471
Hypothetical protein.
    
   0.685
C804_05267
Hypothetical protein.
    
   0.685
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
   
   0.574
C804_03957
Hypothetical protein.
  
   
 0.553
C804_05037
Hypothetical protein.
   
   0.544
lysS
lysine-tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
    0.427
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
 
    0.401
C804_00794
Hypothetical protein.
     
 0.400
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.