Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_01909Hypothetical protein. (319 aa)    
Predicted Functional Partners:
C804_05105
Hypothetical protein.
 
   0.665
C804_05106
Hypothetical protein.
 
    0.628
C804_05104
Hypothetical protein.
 
    0.599
C804_00268
Hypothetical protein.
  
    0.553
C804_01910
Hypothetical protein.
       0.550
C804_05117
ATP-dependent Lon protease.
  
    0.540
C804_05666
Hypothetical protein.
  
     0.516
C804_04567
Hypothetical protein.
  
     0.495
C804_03469
Hypothetical protein.
   
    0.487
C804_05665
Hypothetical protein.
  
     0.485
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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