Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_01969Hypothetical protein. (320 aa)    
Predicted Functional Partners:
C804_01968
Hypothetical protein.
 
    0.951
C804_01323
Hypothetical protein.
  
 0.946
C804_01967
Hypothetical protein.
 
    0.919
C804_01965
Hypothetical protein.
 
    0.897
C804_04092
uroporphyrinogen-III C-methyltransferase.
  
  
 0.844
C804_05721
Hypothetical protein.
 
    0.795
rnfB
Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
  0.703
C804_05223
Hypothetical protein.
 
    0.701
C804_01966
Hypothetical protein.
 
    
0.686
C804_05716
Hypothetical protein.
 
     0.660
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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