Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
C804_02071Sodium ion-translocating decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD). (382 aa)    
Predicted Functional Partners:
C804_02072
Oxaloacetate decarboxylase, alpha subunit.
 
 
 0.997
C804_02070
Hypothetical protein.
 
  
 0.990
C804_02068
Hypothetical protein.
 
  
 0.917
C804_02069
Sodium pump decarboxylase, gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.
    
  0.911
C804_06077
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.911
C804_03277
Malate dehydrogenase (oxaloacetate-decarboxylating).
    
 0.883
C804_03877
Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
    
 0.877
C804_04299
Hypothetical protein.
    
 0.875
C804_01223
Hypothetical protein.
    
 0.871
C804_02864
3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.864
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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