Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02110Hypothetical protein. (204 aa)    
Predicted Functional Partners:
C804_02106
Hypothetical protein.
     0.876
C804_01701
Hypothetical protein.
  
     0.769
cas2
CRISPR-associated endoribonuclease cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
   
   0.559
C804_01533
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.540
C804_02107
Hypothetical protein; Belongs to the 'phage' integrase family.
       0.509
C804_02108
Hypothetical protein.
       0.509
C804_02109
Hypothetical protein; Belongs to the 'phage' integrase family.
       0.509
C804_01864
Hypothetical protein.
  
     0.475
C804_04075
Hypothetical protein.
  
     0.446
C804_00046
Hypothetical protein.
  
     0.425
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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