Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rtcBHypothetical protein; Belongs to the RtcB family. (499 aa)    
Predicted Functional Partners:
C804_05369
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
   
 0.890
C804_01707
Hypothetical protein.
 
     0.642
C804_02120
Hypothetical protein.
       0.613
C804_01708
Hypothetical protein.
 
     0.599
C804_00962
Hypothetical protein.
 
    0.596
C804_02121
Hypothetical protein.
       0.568
C804_01305
Hypothetical protein.
 
    0.565
C804_01304
Hypothetical protein.
 
    0.553
C804_04317
Hypothetical protein.
   
   0.552
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
     
  0.523
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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