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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_02128Hypothetical protein. (543 aa)    
Predicted Functional Partners:
ybeY
YbeY/UPF0054 family metalloprotein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.815
C804_02125
Hypothetical protein.
       0.775
C804_02124
Sporulation protein YqfD.
     
 0.742
C804_02126
Hypothetical protein.
       0.717
C804_03901
UPF0297 protein; Belongs to the UPF0297 family.
  
     0.709
C804_02130
HI0933 family flavoprotein.
       0.702
C804_02123
Sporulation protein YqfC.
     
 0.697
C804_05595
Hypothetical protein.
  
     0.670
C804_05659
Hypothetical protein.
  
     0.616
C804_02131
Hypothetical protein.
       0.585
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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