Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02154Hypothetical protein. (955 aa)    
Predicted Functional Partners:
C804_02158
Hypothetical protein; Belongs to the SEDS family.
 
 0.984
C804_01255
Hypothetical protein.
 
 0.979
C804_02152
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.978
C804_00639
Hypothetical protein.
 
 
 0.972
C804_02151
MreB/Mrl family cell shape determining protein.
 
 
 
 0.947
C804_05528
Hypothetical protein.
 
 0.947
C804_02153
Rod shape-determining protein MreD.
 
  
 0.942
C804_01257
Cell division protein FtsW; Belongs to the SEDS family.
 
 0.936
C804_02366
Hypothetical protein.
 
0.899
C804_01449
Hypothetical protein; Belongs to the SEDS family.
  
 0.881
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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