Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02255Hypothetical protein. (199 aa)    
Predicted Functional Partners:
C804_04506
Undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.687
C804_00519
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
  0.568
C804_00539
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
  0.568
C804_01642
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
  0.568
C804_03102
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
  0.568
C804_03108
TDP-4-keto-6-deoxy-D-glucose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
  0.568
C804_03116
UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
  0.568
C804_04118
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
  0.568
C804_04428
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
  0.568
C804_04439
CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
  0.568
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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