Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02424Hypothetical protein. (154 aa)    
Predicted Functional Partners:
C804_02804
Hypothetical protein.
     0.643
C804_06203
Hypothetical protein.
 
  
 0.532
C804_05152
Hypothetical protein.
  
  
  0.466
ureC
Urease subunit alpha.
    
  0.452
C804_02425
GntR family transcriptional regulator.
       0.451
C804_02426
ABC transporter ATP-binding protein.
       0.451
C804_02427
Hypothetical protein.
       0.451
C804_05636
Chorismate mutase.
    
  0.450
C804_00076
Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
   
  0.440
C804_02875
Carboxynorspermidine decarboxylase.
   
  0.440
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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