Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02454Hypothetical protein. (325 aa)    
Predicted Functional Partners:
C804_02451
Hypothetical protein.
  
  0.824
C804_05248
Toxin secretion/phage lysis holin.
 
  
 0.618
C804_02455
Hypothetical protein.
       0.580
C804_02453
Hypothetical protein.
       0.556
C804_05234
HK97 family phage major capsid protein.
 
    0.493
C804_04080
Hypothetical protein.
  
     0.468
C804_06586
Hypothetical protein.
  
     0.468
C804_01991
Hypothetical protein.
  
     0.464
C804_02908
Hypothetical protein.
  
     0.461
C804_03744
Hypothetical protein.
  
     0.460
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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