Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02458Hypothetical protein. (104 aa)    
Predicted Functional Partners:
glyQS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
    
 0.834
C804_01966
Hypothetical protein.
 
    0.794
C804_05222
Hypothetical protein.
 
    0.781
C804_02457
Hypothetical protein.
       0.773
C804_02459
Hypothetical protein.
       0.773
C804_02460
Hypothetical protein.
       0.773
C804_05031
Hypothetical protein.
   
 
 0.724
C804_05213
Hypothetical protein.
 
 
   0.715
C804_05218
Hypothetical protein.
 
    0.708
C804_05234
HK97 family phage major capsid protein.
  
   
 0.705
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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